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255 lines
10 KiB
255 lines
10 KiB
// 大名科技(天津)有限公司版权所有 电话:18020030720 QQ:515096995
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//
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// 此源代码遵循位于源代码树根目录中的 LICENSE 文件的许可证
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using System.ComponentModel;
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using System.ComponentModel.DataAnnotations;
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using Admin.NET.Bodk.Core;
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using Admin.NET.Bodk.Genetic.Entities.Reports;
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using Admin.NET.Bodk.Genetic.Entities.Tumors;
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using Admin.NET.Bodk.Genetic.Models.Reports;
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using Admin.NET.Core;
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using Admin.NET.Core.Service;
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using Furion.FriendlyException;
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using Microsoft.AspNetCore.Authentication.JwtBearer;
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using Microsoft.AspNetCore.Authorization;
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using Microsoft.AspNetCore.Mvc;
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namespace Admin.NET.Bodk.Genetic;
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[ApiDescriptionSettings(Groups = new[] { "Bodk Groups" }, Name = "GeneReport", Description = "基因检测服务")]
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public class GeneReportService(
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UserManager userManager,
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SysOrgService sysOrgService,
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SysUserService sysUserService,
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SqlSugarRepository<GeneTestingTumorLocusReportEntity> geneTestingTumorLocusReportRepository,
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SqlSugarRepository<GeneTestingReportEntity> reportRepository,
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SqlSugarRepository<GeneTestingTumorReportEntity> geneTestingTumorReportRepository)
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: ServiceBase(userManager, sysOrgService, sysUserService)
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{
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[Authorize(AuthenticationSchemes = JwtBearerDefaults.AuthenticationScheme + "," + SignatureAuthenticationDefaults.AuthenticationScheme)]
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[DisplayName("Add")]
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public async Task AddReport(AddReportInput input)
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{
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var db = geneTestingTumorLocusReportRepository.Context;
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try
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{
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await db.Ado.BeginTranAsync();
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var entity = new GeneTestingReportEntity()
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{
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SampleType = input.SampleType,
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TestingType = input.TestingType,
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TestingMethod = input.TestingMethod,
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TofMs = input.TofMs,
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GenotypingAnalysis = input.GenotypingAnalysis,
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SampleQuality = input.SampleQuality,
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GeneticRiskAssessment = input.GeneticRiskAssessment,
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Barcode = input.Barcode,
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DnaExtraction = input.DnaExtraction,
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CustomerId = input.CustomerId,
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ReportTime = input.ReportTime,
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Report = input.Report,
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Pcr = input.Pcr,
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SubmissionTime = input.SubmissionTime,
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};
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entity = await AddBefore(entity);
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var reportId = await db.Insertable(entity).ExecuteReturnSnowflakeIdAsync();
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foreach (var tumor in input.Tumors)
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{
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var tumorEntity = new GeneTestingTumorReportEntity()
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{
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TumorId = tumor.TumorId,
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RiskScore = tumor.RiskScore,
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RiskLevel = tumor.RiskLevel,
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ReportId = reportId
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};
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tumorEntity = await AddBefore(tumorEntity);
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var tumorId = await db.Insertable(tumorEntity).ExecuteReturnSnowflakeIdAsync();
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foreach (var locus in tumor.Loci)
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{
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var locusEntity = new GeneTestingTumorLocusReportEntity()
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{
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LocusId = locus.LocusId,
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RiskId = locus.RiskId,
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TumorId = tumorId
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};
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locusEntity = await AddBefore(locusEntity);
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await db.Insertable(locusEntity).ExecuteReturnSnowflakeIdAsync();
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}
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}
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await db.Ado.CommitTranAsync();
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}
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catch
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{
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await db.Ado.RollbackTranAsync();
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throw;
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}
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}
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[Authorize(AuthenticationSchemes = JwtBearerDefaults.AuthenticationScheme + "," + SignatureAuthenticationDefaults.AuthenticationScheme)]
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[DisplayName("GetList")]
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public async Task<List<ReportOutput>> GetList([Required] long customerId)
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{
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var db = reportRepository.Context;
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var reports = await db.Queryable<GeneTestingReportEntity>()
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.Where(r => r.CustomerId == customerId)
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.Select(r => new ReportOutput()
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{
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SampleType = r.SampleType,
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TestingType = r.TestingType,
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TestingMethod = r.TestingMethod,
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TofMs = r.TofMs,
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GenotypingAnalysis = r.GenotypingAnalysis,
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SampleQuality = r.SampleQuality,
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GeneticRiskAssessment = r.GeneticRiskAssessment,
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Barcode = r.Barcode,
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DnaExtraction = r.DnaExtraction,
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CustomerId = r.CustomerId,
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Id = r.Id,
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ReportTime = r.ReportTime,
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Report = r.Report,
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Pcr = r.Pcr,
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SubmissionTime = r.SubmissionTime
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}).ToListAsync();
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foreach (var report in reports)
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{
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var tumors = await db.Queryable<GeneTestingTumorReportEntity>()
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.LeftJoin<TumorEntity>((r, t) => r.TumorId == t.Id)
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.Where(r => r.ReportId == report.Id)
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.Select((r, t) => new TumorOutput()
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{
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AvaRiskScore = t.AvaRiskScore,
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TumorName = t.TumorName,
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Description = t.Description,
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Code = t.Code,
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RiskScore = r.RiskScore,
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RiskLevel = r.RiskLevel,
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ReportId = report.Id,
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TumorId = r.TumorId,
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Id = r.Id,
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}).ToListAsync();
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foreach (var tumor in tumors)
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{
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var loci = await db.Queryable<GeneTestingTumorLocusReportEntity>()
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.LeftJoin<GeneLocusEntity>((l, gl) => l.LocusId == gl.Id)
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.LeftJoin<GeneTypeEntity>((l, gl, gt) => l.RiskId == gt.Id)
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.Where(l => l.TumorId == tumor.Id)
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.Select((l, gl, gt) => new LocusOutput()
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{
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Description = gt.Description,
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Risk = gt.Risk,
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GenekType = gt.GenekType,
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Position = gl.Position,
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LocusName = gl.Name,
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Id = l.Id,
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}).ToListAsync();
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tumor.Loci = loci;
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}
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report.Tumors = tumors;
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}
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return reports;
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}
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[Authorize(AuthenticationSchemes = JwtBearerDefaults.AuthenticationScheme + "," + SignatureAuthenticationDefaults.AuthenticationScheme)]
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[DisplayName("Bind")]
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public async Task<long> Bind(BindInput input)
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{
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GeneTestingReportEntity entity = new GeneTestingReportEntity()
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{
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CustomerId = input.CustomerId,
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Barcode = input.Barcode
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};
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entity = await AddBefore(entity);
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return await reportRepository.InsertReturnSnowflakeIdAsync(entity);
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}
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[Authorize(AuthenticationSchemes = JwtBearerDefaults.AuthenticationScheme + "," + SignatureAuthenticationDefaults.AuthenticationScheme)]
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[DisplayName("Update")]
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public async Task UpdateReport(UpdateReportInput input)
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{
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var db = geneTestingTumorLocusReportRepository.Context;
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try
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{
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await db.Ado.BeginTranAsync();
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var entity = new GeneTestingReportEntity()
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{
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Id = input.Id,
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SampleType = input.SampleType,
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TestingType = input.TestingType,
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TestingMethod = input.TestingMethod,
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TofMs = input.TofMs,
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GenotypingAnalysis = input.GenotypingAnalysis,
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SampleQuality = input.SampleQuality,
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GeneticRiskAssessment = input.GeneticRiskAssessment,
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Barcode = input.Barcode,
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DnaExtraction = input.DnaExtraction,
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CustomerId = input.CustomerId,
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ReportTime = input.ReportTime,
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Report = input.Report,
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Pcr = input.Pcr,
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SubmissionTime = input.SubmissionTime,
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};
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entity = await UpdateBefore(entity);
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await db.Updateable(entity).ExecuteCommandAsync();
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foreach (var tumor in input.Tumors)
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{
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var tumorEntity = new GeneTestingTumorReportEntity()
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{
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TumorId = tumor.TumorId,
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RiskScore = tumor.RiskScore,
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RiskLevel = tumor.RiskLevel,
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ReportId = input.Id
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};
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long tumorId = 0;
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if (tumor.Id is null)
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{
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tumorEntity = await AddBefore(tumorEntity);
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tumorId = await db.Insertable(tumorEntity).ExecuteReturnSnowflakeIdAsync();
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}
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else
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{
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tumorEntity.Id=tumor.Id.Value;
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tumorEntity = await UpdateBefore(tumorEntity);
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await db.Updateable<TumorEntity>(tumorEntity).ExecuteCommandAsync();
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tumorId = tumor.Id.Value;
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}
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foreach (var locus in tumor.Loci)
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{
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var locusEntity = new GeneTestingTumorLocusReportEntity()
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{
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LocusId = locus.LocusId,
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RiskId = locus.RiskId,
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TumorId = tumorId
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};
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if (locus.Id is null)
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{
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locusEntity = await AddBefore(locusEntity);
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await db.Insertable(locusEntity).ExecuteReturnSnowflakeIdAsync();
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}
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else
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{
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locusEntity.Id=locus.Id.Value;
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locusEntity = await UpdateBefore(locusEntity);
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await db.Updateable(locusEntity).ExecuteCommandAsync();
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}
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}
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}
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await db.Ado.CommitTranAsync();
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}
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catch
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{
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await db.Ado.RollbackTranAsync();
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throw;
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}
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}
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// public async Task<ReportOutput> GetSingle([Required] string barcode)
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// {
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// }
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}
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